IL_8OO0_002

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8OO0|1|4|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_002 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.2255

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8OO0|1|1|C|8
8OO0|1|1|C|9
*
8OO0|1|4|G|150
8OO0|1|4|C|151
8OO0|1|4|G|152

Current chains

Chain 1

28S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15

Chain LX

60S ribosomal protein L25-like protein