IL_8OO0_045
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8OO0|1|1|G|983
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_045 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1372
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8OO0|1|1|G|981
8OO0|1|1|C|982
8OO0|1|1|G|983
8OO0|1|1|A|984
8OO0|1|1|A|985
8OO0|1|1|U|986
*
8OO0|1|1|A|1029
8OO0|1|1|A|1030
8OO0|1|1|A|1031
8OO0|1|1|C|1032
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
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