IL_8OO0_048

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUCG*CAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_048 not in the Motif Atlas

Geometric match to IL_8C3A_151

Geometric discrepancy: 0.2928

The information below is about IL_8C3A_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8OO0|1|1|A|995
8OO0|1|1|C|996
8OO0|1|1|U|997
8OO0|1|1|C|998
8OO0|1|1|G|999
*
8OO0|1|1|C|1018
8OO0|1|1|A|1019
8OO0|1|1|U|1020

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein