IL_8OO0_064
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 8OO0|1|1|G|1412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_064 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.1325
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8OO0|1|1|C|1359
8OO0|1|1|G|1360
8OO0|1|1|U|1361
*
8OO0|1|1|A|1411
8OO0|1|1|G|1412
8OO0|1|1|U|1413
8OO0|1|1|G|1414
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain La
- Ribosomal protein L18e/L15P domain-containing protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lq
- Putative 60S ribosomal protein
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