IL_8OO0_070

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAC*GGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_070 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.3643

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8OO0|1|1|U|1484
8OO0|1|1|G|1485
8OO0|1|1|A|1486
8OO0|1|1|A|1487
8OO0|1|1|C|1488
*
8OO0|1|1|G|1496
8OO0|1|1|G|1497
8OO0|1|1|A|1498

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19

Chain Ll

60S ribosomal protein L39