IL_8OO0_081

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8OO0|1|1|G|1731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_081 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.124

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8OO0|1|1|U|1674
8OO0|1|1|U|1675
8OO0|1|1|A|1676
8OO0|1|1|A|1677
8OO0|1|1|C|1678
*
8OO0|1|1|G|1727
8OO0|1|1|G|1728
8OO0|1|1|A|1729
8OO0|1|1|A|1730
8OO0|1|1|G|1731
8OO0|1|1|A|1732

Current chains

Chain 1

28S rRNA

Nearby chains

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38