IL_8OO0_094
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8OO0|1|1|U|2122, 8OO0|1|1|U|2138, 8OO0|1|1|C|2142
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_094 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1512
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|1|C|2119
8OO0|1|1|G|2120
8OO0|1|1|A|2121
8OO0|1|1|U|2122
8OO0|1|1|G|2123
8OO0|1|1|G|2124
*
8OO0|1|1|U|2136
8OO0|1|1|G|2137
8OO0|1|1|U|2138
8OO0|1|1|U|2139
8OO0|1|1|G|2140
8OO0|1|1|A|2141
8OO0|1|1|C|2142
8OO0|1|1|G|2143
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
Coloring options: