IL_8OO0_101

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8OO0|1|1|A|2244, 8OO0|1|1|C|2250, 8OO0|1|1|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_101 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1424

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8OO0|1|1|C|2240
8OO0|1|1|C|2241
8OO0|1|1|A|2242
8OO0|1|1|A|2243
8OO0|1|1|A|2244
8OO0|1|1|U|2245
8OO0|1|1|G|2246
8OO0|1|1|C|2247
8OO0|1|1|C|2248
8OO0|1|1|U|2249
8OO0|1|1|C|2250
8OO0|1|1|G|2251
*
8OO0|1|1|C|2267
8OO0|1|1|G|2268
8OO0|1|1|C|2269
8OO0|1|1|G|2270

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-A