IL_8OO0_102

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_102 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.0834

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OO0|1|1|G|2354
8OO0|1|1|C|2355
8OO0|1|1|G|2356
8OO0|1|1|G|2357
*
8OO0|1|1|U|2945
8OO0|1|1|A|2946
8OO0|1|1|C|2947

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein