IL_8OO0_107

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UAUU

Length

7 nucleotides

Bulged bases

8OO0|1|1|U|2464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_107 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1439

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OO0|1|1|A|2408
8OO0|1|1|U|2409
8OO0|1|1|A|2410
*
8OO0|1|1|U|2462
8OO0|1|1|A|2463
8OO0|1|1|U|2464
8OO0|1|1|U|2465

Current chains

Chain 1

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36