IL_8OO0_121

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8OO0|1|1|G|2904, 8OO0|1|1|A|2905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_121 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1738

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8OO0|1|1|C|2838
8OO0|1|1|U|2839
8OO0|1|1|C|2840
*
8OO0|1|1|G|2902
8OO0|1|1|U|2903
8OO0|1|1|G|2904
8OO0|1|1|A|2905
8OO0|1|1|G|2906

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LV

60S ribosomal protein l23-like protein