IL_8OO0_131

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8OO0|1|1|U|3014, 8OO0|1|1|U|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_131 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1134

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8OO0|1|1|U|3012
8OO0|1|1|U|3013
8OO0|1|1|U|3014
8OO0|1|1|U|3015
8OO0|1|1|U|3016
8OO0|1|1|G|3017
*
8OO0|1|1|C|3042
8OO0|1|1|G|3043
8OO0|1|1|A|3044
8OO0|1|1|A|3045
8OO0|1|1|G|3046

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LW

60S ribosomal protein L24

Chain Ld

Putative 60S ribosomal protein