IL_8OO0_147

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8OO0|1|1|U|3295, 8OO0|1|1|U|3296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_147 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.189

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OO0|1|1|C|3290
8OO0|1|1|C|3291
*
8OO0|1|1|G|3294
8OO0|1|1|U|3295
8OO0|1|1|U|3296
8OO0|1|1|G|3297

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L22-like protein

Chain SI

40S ribosomal protein S8