IL_8OO0_150

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8OO0|1|2|A|465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_150 not in the Motif Atlas

Homologous match to IL_4V88_386

Geometric discrepancy: 0.1926

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8OO0|1|2|U|37
8OO0|1|2|C|38
8OO0|1|2|A|39
8OO0|1|2|A|40
8OO0|1|2|A|41
*
8OO0|1|2|U|463
8OO0|1|2|G|464
8OO0|1|2|A|465
8OO0|1|2|C|466
8OO0|1|2|A|467
8OO0|1|2|A|468

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24