IL_8OO0_157

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_157 not in the Motif Atlas

Homologous match to IL_8C3A_401

Geometric discrepancy: 0.1617

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8OO0|1|2|U|116
8OO0|1|2|U|117
8OO0|1|2|A|118
8OO0|1|2|U|119
8OO0|1|2|U|120
8OO0|1|2|U|121
*
8OO0|1|2|A|292
8OO0|1|2|U|293
8OO0|1|2|U|294
8OO0|1|2|C|295
8OO0|1|2|A|296

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

40S ribosomal protein S8