IL_8OO0_158

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8OO0|1|2|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_158 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1345

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8OO0|1|2|G|140
8OO0|1|2|G|141
8OO0|1|2|A|142
8OO0|1|2|U|143
8OO0|1|2|A|144
8OO0|1|2|A|145
8OO0|1|2|C|146
*
8OO0|1|2|G|162
8OO0|1|2|C|163
8OO0|1|2|U|164
8OO0|1|2|A|165
8OO0|1|2|A|166
8OO0|1|2|U|167
8OO0|1|2|A|168
8OO0|1|2|C|169

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24