IL_8OO0_178
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_178 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1546
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8OO0|1|2|A|547
8OO0|1|2|G|548
8OO0|1|2|G|549
8OO0|1|2|G|550
8OO0|1|2|C|551
8OO0|1|2|A|552
8OO0|1|2|A|553
8OO0|1|2|G|554
*
8OO0|1|2|C|584
8OO0|1|2|U|585
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- Hyaluronan/mRNA-binding protein domain-containing protein
- Chain SC
- 40S ribosomal protein S2-like protein
- Chain SJ
- 40S ribosomal protein s9-like protein
- Chain Se
- 40S ribosomal protein S30
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