IL_8OO0_179

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8OO0|1|2|U|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_179 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.2013

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8OO0|1|2|G|554
8OO0|1|2|U|555
8OO0|1|2|C|556
*
8OO0|1|2|G|583
8OO0|1|2|C|584

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Hyaluronan/mRNA-binding protein domain-containing protein

Chain SD

40S ribosomal protein S3-like protein

Chain Se

40S ribosomal protein S30