IL_8OO0_187

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGAAC*GGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_187 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3412

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OO0|1|2|G|698
8OO0|1|2|A|699
8OO0|1|2|G|700
8OO0|1|2|A|701
8OO0|1|2|A|702
8OO0|1|2|C|703
*
8OO0|1|2|G|729
8OO0|1|2|G|730
8OO0|1|2|G|731
8OO0|1|2|A|732
8OO0|1|2|A|733
8OO0|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SH

40S ribosomal protein S7