IL_8OO0_210

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_210 not in the Motif Atlas

Homologous match to IL_8C3A_450

Geometric discrepancy: 0.1387

The information below is about IL_8C3A_450

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8OO0|1|2|C|1170
8OO0|1|2|C|1171
8OO0|1|2|U|1172
*
8OO0|1|2|G|1460
8OO0|1|2|C|1461
8OO0|1|2|G|1462

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-like protein

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein