IL_8OO0_213

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCC*GUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_213 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3176

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8OO0|1|2|G|1210
8OO0|1|2|U|1211
8OO0|1|2|C|1212
8OO0|1|2|C|1213
*
8OO0|1|2|G|1444
8OO0|1|2|U|1445
8OO0|1|2|U|1446

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein s10-like protein

Chain Sd

40S ribosomal protein S29

Chain Sf

40S ribosomal protein S27a-like protein