IL_8OO0_214
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8OO0|1|2|G|1225, 8OO0|1|2|U|1254
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_214 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3059
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OO0|1|2|A|1221
8OO0|1|2|U|1222
8OO0|1|2|G|1223
8OO0|1|2|A|1224
8OO0|1|2|G|1225
8OO0|1|2|G|1226
8OO0|1|2|A|1227
8OO0|1|2|U|1228
8OO0|1|2|U|1229
8OO0|1|2|G|1230
*
8OO0|1|2|C|1249
8OO0|1|2|U|1250
8OO0|1|2|U|1251
8OO0|1|2|G|1252
8OO0|1|2|A|1253
8OO0|1|2|U|1254
8OO0|1|2|U|1255
8OO0|1|2|U|1256
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein s10-like protein
- Chain SM
- 40S ribosomal protein S12
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- 40S ribosomal protein S27a-like protein
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