IL_8OO0_224

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8OO0|1|2|A|1343, 8OO0|1|2|U|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_224 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1967

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8OO0|1|2|A|1342
8OO0|1|2|A|1343
8OO0|1|2|U|1344
8OO0|1|2|A|1345
*
8OO0|1|2|U|1374
8OO0|1|2|U|1375
8OO0|1|2|C|1376
8OO0|1|2|U|1377

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SU

40S ribosomal protein S20-like protein