IL_8OO0_230

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_230 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2105

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OO0|1|2|C|1490
8OO0|1|2|C|1491
8OO0|1|2|U|1492
*
8OO0|1|2|G|1507
8OO0|1|2|G|1508
8OO0|1|2|G|1509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S19-like protein