IL_8OO0_233

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8OO0|1|2|C|1633, 8OO0|1|2|A|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_233 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1492

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8OO0|1|2|C|1632
8OO0|1|2|C|1633
8OO0|1|2|G|1634
*
8OO0|1|2|C|1760
8OO0|1|2|A|1761
8OO0|1|2|A|1762
8OO0|1|2|G|1763

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Hyaluronan/mRNA-binding protein domain-containing protein

Chain Sa

40S ribosomal protein S26