IL_8OO0_234

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_234 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.0884

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8OO0|1|2|G|1634
8OO0|1|2|C|1635
8OO0|1|2|C|1636
8OO0|1|2|C|1637
*
8OO0|1|2|G|1756
8OO0|1|2|U|1757
8OO0|1|2|A|1758
8OO0|1|2|A|1759
8OO0|1|2|C|1760

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

Hyaluronan/mRNA-binding protein domain-containing protein

Chain Ln

60S ribosomal protein L41-A