IL_8OO0_239

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8OO0|1|2|U|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_239 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.1583

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OO0|1|2|U|1652
8OO0|1|2|U|1653
8OO0|1|2|G|1654
*
8OO0|1|2|U|1739
8OO0|1|2|A|1740

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein l23-like protein

Chain Ln

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein s23-like protein