IL_8OO0_244

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAC*GAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_244 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1239

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8OO0|1|2|C|1674
8OO0|1|2|G|1675
8OO0|1|2|G|1676
8OO0|1|2|A|1677
8OO0|1|2|C|1678
*
8OO0|1|2|G|1715
8OO0|1|2|A|1716
8OO0|1|2|A|1717
8OO0|1|2|A|1718
8OO0|1|2|G|1719

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8