IL_8OO0_259
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAU*ACUCC
- Length
- 9 nucleotides
- Bulged bases
- 8OO0|1|1|C|471
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_259 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.3744
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8OO0|1|1|G|444
8OO0|1|1|G|445
8OO0|1|1|A|446
8OO0|1|1|U|447
*
8OO0|1|1|A|470
8OO0|1|1|C|471
8OO0|1|1|U|472
8OO0|1|1|C|473
8OO0|1|1|C|474
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain Lq
- Putative 60S ribosomal protein
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