IL_8OO0_263
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUAGG*CAUUCU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_263 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3987
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OO0|1|1|A|988
8OO0|1|1|U|989
8OO0|1|1|U|990
8OO0|1|1|A|991
8OO0|1|1|G|992
8OO0|1|1|G|993
*
8OO0|1|1|C|1022
8OO0|1|1|A|1023
8OO0|1|1|U|1024
8OO0|1|1|U|1025
8OO0|1|1|C|1026
8OO0|1|1|U|1027
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
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