IL_8OO0_264

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_264 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2652

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8OO0|1|1|C|1102
8OO0|1|1|A|1103
8OO0|1|1|U|1104
8OO0|1|1|U|1105
*
8OO0|1|1|A|1119
8OO0|1|1|C|1120
8OO0|1|1|U|1121
8OO0|1|1|G|1122

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein l7-like protein

Chain Lb

60S ribosomal protein L29