IL_8OO0_287

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*GGAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_287 not in the Motif Atlas

Geometric match to IL_6CZR_361

Geometric discrepancy: 0.2463

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

8OO0|1|2|A|745
8OO0|1|2|C|746
8OO0|1|2|U|747
*
8OO0|1|2|G|799
8OO0|1|2|G|800
8OO0|1|2|A|801
8OO0|1|2|A|802
8OO0|1|2|U|803

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11-like protein

Chain SW

40S ribosomal protein S22-like protein

Chain SX

40S ribosomal protein s23-like protein