IL_8OO0_291
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAUU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_291 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.1982
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8OO0|1|2|G|883
8OO0|1|2|U|884
8OO0|1|2|A|885
8OO0|1|2|U|886
8OO0|1|2|U|887
*
8OO0|1|2|A|921
8OO0|1|2|A|922
8OO0|1|2|G|923
8OO0|1|2|A|924
8OO0|1|2|C|925
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain SB
- 40S ribosomal protein S1
- Chain SO
- 40S ribosomal protein S14-like protein
- Chain Sa
- 40S ribosomal protein S26
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