IL_8OO0_305

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8OO0|1|1|A|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_305 not in the Motif Atlas

Homologous match to IL_8CRE_120

Geometric discrepancy: 0.1835

The information below is about IL_8CRE_120

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8OO0|1|1|U|2850
8OO0|1|1|A|2851
*
8OO0|1|1|U|2868
8OO0|1|1|A|2869
8OO0|1|1|A|2870
8OO0|1|1|G|2871

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain Lm

Ubiquitin-like domain-containing protein