IL_8OVE_005

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACUUAG*CGC

Length

10 nucleotides

Bulged bases

8OVE|1|AA|A|75

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_005 not in the Motif Atlas

Homologous match to IL_8C3A_395

Geometric discrepancy: 0.1468

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OVE|1|AA|G|70
8OVE|1|AA|A|71
8OVE|1|AA|C|72
8OVE|1|AA|U|73
8OVE|1|AA|U|74
8OVE|1|AA|A|75
8OVE|1|AA|G|76
*
8OVE|1|AA|C|524
8OVE|1|AA|G|525
8OVE|1|AA|C|526

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A6

Probable 40S ribosomal protein S9

Chain AS

40S ribosomal protein S23, putative