IL_8OVE_009

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAAU*AA

Length

6 nucleotides

Bulged bases

8OVE|1|AA|A|139, 8OVE|1|AA|A|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_009 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.1768

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OVE|1|AA|U|138
8OVE|1|AA|A|139
8OVE|1|AA|A|140
8OVE|1|AA|U|141
*
8OVE|1|AA|A|394
8OVE|1|AA|A|395

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain A5

40S ribosomal protein S8

Chain AE

40S ribosomal proteins S11, putative