IL_8OVE_010

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGCC*GACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_010 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.2399

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

8OVE|1|AA|C|142
8OVE|1|AA|U|143
8OVE|1|AA|G|144
8OVE|1|AA|C|145
8OVE|1|AA|C|146
*
8OVE|1|AA|G|390
8OVE|1|AA|A|391
8OVE|1|AA|C|392
8OVE|1|AA|G|393

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain A5

40S ribosomal protein S8