IL_8OVE_015

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGA,UCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_015 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1197

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8OVE|1|AA|U|285
8OVE|1|AA|G|286
8OVE|1|AA|A|287
*
8OVE|1|AA|U|348
8OVE|1|AA|C|349
8OVE|1|AA|A|350

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain A5

40S ribosomal protein S8

Chain AE

40S ribosomal proteins S11, putative