IL_8OVE_019

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_019 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.1937

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OVE|1|AA|C|421
8OVE|1|AA|C|422
8OVE|1|AA|G|423
*
8OVE|1|AA|C|433
8OVE|1|AA|U|434
8OVE|1|AA|G|435

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A5

40S ribosomal protein S8

Chain AE

40S ribosomal proteins S11, putative

Chain BB

Large subunit ribosomal RNA; LSU rRNA