IL_8OVE_025

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

8OVE|1|AA|G|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_025 not in the Motif Atlas

Homologous match to IL_8C3A_417

Geometric discrepancy: 0.2155

The information below is about IL_8C3A_417

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

8OVE|1|AA|U|540
8OVE|1|AA|G|541
*
8OVE|1|AA|U|556
8OVE|1|AA|G|557
8OVE|1|AA|A|558

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain A6

Probable 40S ribosomal protein S9

Chain AT

40S ribosomal protein S24