IL_8OVE_030

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUU(A2M)AAG*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_030 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1827

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8OVE|1|AA|G|718
8OVE|1|AA|U|719
8OVE|1|AA|U|720
8OVE|1|AA|A2M|721
8OVE|1|AA|A|722
8OVE|1|AA|A|723
8OVE|1|AA|G|724
*
8OVE|1|AA|U|1509
8OVE|1|AA|C|1510

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AS

40S ribosomal protein S23, putative

Chain AV

40S ribosomal protein S26

Chain Bz

Ribosomal protein L41