IL_8OVE_037

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CACGGGAGCAGU*GCGUCCG

Length

19 nucleotides

Bulged bases

8OVE|1|AA|G|842, 8OVE|1|AA|G|845, 8OVE|1|AA|C|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|AA|C|838
8OVE|1|AA|A|839
8OVE|1|AA|C|840
8OVE|1|AA|G|841
8OVE|1|AA|G|842
8OVE|1|AA|G|843
8OVE|1|AA|A|844
8OVE|1|AA|G|845
8OVE|1|AA|C|846
8OVE|1|AA|A|847
8OVE|1|AA|G|848
8OVE|1|AA|U|849
*
8OVE|1|AA|G|887
8OVE|1|AA|C|888
8OVE|1|AA|G|889
8OVE|1|AA|U|890
8OVE|1|AA|C|891
8OVE|1|AA|C|892
8OVE|1|AA|G|893

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain A3

40S ribosomal protein S6

Chain AE

40S ribosomal proteins S11, putative