IL_8OVE_038

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAUGCGACCAAAGCAG*CUUGAAU

Length

24 nucleotides

Bulged bases

8OVE|1|AA|G|921, 8OVE|1|AA|C|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|AA|A|915
8OVE|1|AA|G|916
8OVE|1|AA|A|917
8OVE|1|AA|U|918
8OVE|1|AA|G|919
8OVE|1|AA|C|920
8OVE|1|AA|G|921
8OVE|1|AA|A|922
8OVE|1|AA|C|923
8OVE|1|AA|C|924
8OVE|1|AA|A|925
8OVE|1|AA|A|926
8OVE|1|AA|A|927
8OVE|1|AA|G|928
8OVE|1|AA|C|929
8OVE|1|AA|A|930
8OVE|1|AA|G|931
*
8OVE|1|AA|C|940
8OVE|1|AA|U|941
8OVE|1|AA|U|942
8OVE|1|AA|G|943
8OVE|1|AA|A|944
8OVE|1|AA|A|945
8OVE|1|AA|U|946

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain A6

Probable 40S ribosomal protein S9

Chain AT

40S ribosomal protein S24