IL_8OVE_042

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGG*CCUU

Length

7 nucleotides

Bulged bases

8OVE|1|AA|C|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_042 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.23

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

8OVE|1|AA|G|1143
8OVE|1|AA|G|1144
8OVE|1|AA|G|1145
*
8OVE|1|AA|C|1235
8OVE|1|AA|C|1236
8OVE|1|AA|U|1237
8OVE|1|AA|U|1238

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A4

40S ribosomal protein S7

Chain AG

40S ribosomal protein S13, putative

Chain AW

40S ribosomal protein S27, putative