IL_8OVE_048
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAAG*UGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_048 not in the Motif Atlas
- Geometric match to IL_4LFB_033
- Geometric discrepancy: 0.1256
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.2
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8OVE|1|AA|C|1267
8OVE|1|AA|A|1268
8OVE|1|AA|A|1269
8OVE|1|AA|A|1270
8OVE|1|AA|G|1271
*
8OVE|1|AA|U|1287
8OVE|1|AA|G|1288
8OVE|1|AA|U|1289
8OVE|1|AA|A|1290
8OVE|1|AA|G|1291
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain AH
- 40S ribosomal protein S14
- Chain AV
- 40S ribosomal protein S26
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain Be
- 60S ribosomal protein L2, putative
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