IL_8OVE_049
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAC*GUUACAG
- Length
- 10 nucleotides
- Bulged bases
- 8OVE|1|AA|U|1501, 8OVE|1|AA|A|1503, 8OVE|1|AA|A|1505
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_049 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.1423
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|AA|C|1311
8OVE|1|AA|A|1312
8OVE|1|AA|C|1313
*
8OVE|1|AA|G|1500
8OVE|1|AA|U|1501
8OVE|1|AA|U|1502
8OVE|1|AA|A|1503
8OVE|1|AA|C|1504
8OVE|1|AA|A|1505
8OVE|1|AA|G|1506
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain AE
- 40S ribosomal proteins S11, putative
- Chain AG
- 40S ribosomal protein S13, putative
- Chain AJ
- 40S ribosomal protein S15a, putative
- Chain AP
- 40S ribosomal protein S2, putative
- Chain AS
- 40S ribosomal protein S23, putative
- Chain AW
- 40S ribosomal protein S27, putative
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