IL_8OVE_054

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG(OMG)AGUACG*UGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|AA|G|1515
8OVE|1|AA|G|1516
8OVE|1|AA|OMG|1517
8OVE|1|AA|A|1518
8OVE|1|AA|G|1519
8OVE|1|AA|U|1520
8OVE|1|AA|A|1521
8OVE|1|AA|C|1522
8OVE|1|AA|G|1523
*
8OVE|1|AA|U|1534
8OVE|1|AA|G|1535
8OVE|1|AA|A|1536
8OVE|1|AA|A|1537
8OVE|1|AA|A|1538
8OVE|1|AA|C|1539
8OVE|1|AA|U|1540

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AS

40S ribosomal protein S23, putative

Chain Bz

Ribosomal protein L41