IL_8OVE_055

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_055 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1672

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OVE|1|AA|G|1523
8OVE|1|AA|U|1524
8OVE|1|AA|U|1525
*
8OVE|1|AA|A|1532
8OVE|1|AA|G|1533
8OVE|1|AA|U|1534

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain Bz

Ribosomal protein L41