IL_8OVE_060

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG*C(OMG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_060 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1098

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8OVE|1|AA|G|1579
8OVE|1|AA|U|1580
8OVE|1|AA|G|1581
*
8OVE|1|AA|C|1930
8OVE|1|AA|OMG|1931
8OVE|1|AA|C|1932

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A

HIS-THR-CYS-THR

Chain AK

40S ribosomal protein S16, putative

Chain AM

40S ribosomal protein S18, putative

Chain AO

Ribosomal protein S19, putative