IL_8OVE_062

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

A(PSU)C*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_062 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1888

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8OVE|1|AA|A|1618
8OVE|1|AA|PSU|1619
8OVE|1|AA|C|1620
*
8OVE|1|AA|G|1915
8OVE|1|AA|U|1916
8OVE|1|AA|U|1917

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A8

Putative ribosomal protein S29

Chain AD

40S ribosomal protein S10, putative